3LBS Transport Protein date Jan 08, 2010
title Crystal Structure Of The Cytoplasmic Tail Of (Pro)Renin Rece Mbp Fusion (Maltose-Bound Form)
authors Y.Zhang, R.M.Garavito
compound source
Molecule: Maltose-Binding Periplasmic Protein, Renin Recept
Chain: A, B
Fragment: Maltose-Binding Periplasmic Protein, Residues 29- Receptor, Residues 332-350;
Synonym: Mmbp, Maltodextrin-Binding Protein, Reninprorenin Atpase H(+)-Transporting Lysosomal Accessory Protein 2, Atp Transporting Lysosomal-Interacting Protein 2, Vacuolar Atp Membrane Sector-Associated Protein M8-9, V-Atpase M8.9 Subu Atp6m8-9, N14f, Er-Localized Type I Transmembrane Adaptor, Liver Differentiation Factor 10;
Engineered: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_taxid: 562, 9606
Gene: B4034, Jw3994, Male, Atp6ap2, Atp6ip2, Caper, Eldf10, Mstp009, Psec0072;
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plw01
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.949 96.784 191.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand GLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • carbohydrate transmembrane t...


  • Primary referenceStructural analysis of the intracellular domain of (pro)renin receptor fused to maltose-binding protein., Zhang Y, Gao X, Michael Garavito R, Biochem Biophys Res Commun. 2011 Mar 21. PMID:21420935
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (3lbs.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 3LBS
  • CSU: Contacts of Structural Units for 3LBS
  • Structure Factors (641 Kb)
  • Retrieve 3LBS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LBS from S2C, [Save to disk]
  • Re-refined 3lbs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LBS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LBS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LBS, from MSDmotif at EBI
  • Fold representative 3lbs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lbs_A] [3lbs] [3lbs_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LBS
  • Community annotation for 3LBS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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