3LDZ Protein Transport date Jan 13, 2010
title Crystal Structure Of Human Stam1 Vhs Domain In Complex With
authors X.Ren, J.H.Hurley
compound source
Molecule: Ubiquitin
Chain: F, E, G
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Signal Transducing Adapter Molecule 1
Chain: A, D, B, C
Fragment: Human Stam1 Vhs Domain
Synonym: Stam-1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.610 112.130 68.660 90.00 99.43 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceVHS domains of ESCRT-0 cooperate in high-avidity binding to polyubiquitinated cargo., Ren X, Hurley JH, EMBO J. 2010 Feb 11. PMID:20150893
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (3ldz.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3ldz.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (3ldz.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (3ldz.pdb4.gz) 35 Kb
  • CSU: Contacts of Structural Units for 3LDZ
  • Structure Factors (223 Kb)
  • Retrieve 3LDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LDZ from S2C, [Save to disk]
  • Re-refined 3ldz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LDZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LDZ, from MSDmotif at EBI
  • Fold representative 3ldz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ldz_C] [3ldz_E] [3ldz_F] [3ldz_B] [3ldz] [3ldz_D] [3ldz_G] [3ldz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3LDZ: [UBQ] [VHS ] by SMART
  • Other resources with information on 3LDZ
  • Community annotation for 3LDZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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