3LQM Protein Binding date Feb 09, 2010
title Structure Of The Il-10r2 Common Chain
authors S.I.Yoon, M.R.Walter
compound source
Molecule: Interleukin-10 Receptor Subunit Beta
Chain: A, B
Fragment: Extracellular Domain
Synonym: Il-10 Receptor Subunit Beta, Il-10r Subunit Beta, Interleukin-10 Receptor Subunit 2, Il-10r Subunit 2, Il-10r Cytokine Receptor Family 2 Member 4, Crf2-4, Cytokine Recep II Member 4;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 6
R_factor 0.210 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.839 124.839 84.223 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.14 Å
ligand GOL, SO4 enzyme
Primary referenceStructure and mechanism of receptor sharing by the IL-10R2 common chain., Yoon SI, Jones BC, Logsdon NJ, Harris BD, Deshpande A, Radaeva S, Halloran BA, Gao B, Walter MR, Structure. 2010 May 12;18(5):638-48. PMID:20462497
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (3lqm.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3lqm.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 3LQM
  • CSU: Contacts of Structural Units for 3LQM
  • Structure Factors (325 Kb)
  • Retrieve 3LQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LQM from S2C, [Save to disk]
  • Re-refined 3lqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LQM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LQM, from MSDmotif at EBI
  • Fold representative 3lqm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lqm_B] [3lqm_A] [3lqm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LQM: [FN3 ] by SMART
  • Other resources with information on 3LQM
  • Community annotation for 3LQM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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