3MWD Transferase date May 05, 2010
title Truncated Human Atp-Citrate Lyase With Citrate Bound
authors M.E.Fraser, T.Sun
compound source
Molecule: Atp-Citrate Synthase
Chain: A
Fragment: Truncated Human Atp-Citrate Lyase (Unp Residues 1
Synonym: Atp-Citrate (Pro-S-)-Lyase, Citrate Cleavage Enzym
Ec: 2.3.3.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acly
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet42b+

Molecule: Atp-Citrate Synthase
Chain: B
Fragment: Truncated Human Atp-Citrate Lyase (Unp Residues 4
Synonym: Atp-Citrate (Pro-S-)-Lyase, Citrate Cleavage Enzym
Ec: 2.3.3.8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acly
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet42b+
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.197 61.704 109.421 90.00 125.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CIT, MSE BindingDB enzyme Transferase E.C.2.3.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceIdentification of the citrate-binding site of human ATP-citrate lyase using X-ray crystallography., Sun T, Hayakawa K, Bateman KS, Fraser ME, J Biol Chem. 2010 Aug 27;285(35):27418-28. Epub 2010 Jun 17. PMID:20558738
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (3mwd.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (3mwd.pdb2.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 3MWD
  • CSU: Contacts of Structural Units for 3MWD
  • Structure Factors (722 Kb)
  • Retrieve 3MWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MWD from S2C, [Save to disk]
  • Re-refined 3mwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MWD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MWD, from MSDmotif at EBI
  • Fold representative 3mwd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mwd_A] [3mwd_B] [3mwd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MWD
  • Community annotation for 3MWD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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