3MY0 Crystal structure of the ACVRL1 (ALK1) kinase domain bound to LDN-193189 date
authors Chaikuad, A., Alfano, I., Cooper, C., Mahajan, P., Daga, N., Sanvitale, C., Fedorov, O., Petrie, K., Savitsky, P., Gileadi, O., Sethi, R., Krojer, T., Muniz, J.R.C., Pike, A.C.W., Vollmar, M., Carpenter, C.P., Ugochukwu, E., Knapp, S., Delft, F.von., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.24707
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand LDN enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceA small molecule targeting ALK1 prevents Notch cooperativity and inhibits functional angiogenesis., Kerr G, Sheldon H, Chaikuad A, Alfano I, von Delft F, Bullock AN, Harris AL, Angiogenesis. 2015 Apr;18(2):209-17. doi: 10.1007/s10456-014-9457-y. Epub 2015, Jan 4. PMID:25557927
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2199 Kb) [Save to disk]
  • Biological Unit Coordinates (3my0.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (3my0.pdb2.gz) 105 Kb
  • Biological Unit Coordinates (3my0.pdb3.gz) 105 Kb
  • Biological Unit Coordinates (3my0.pdb4.gz) 104 Kb
  • Biological Unit Coordinates (3my0.pdb5.gz) 102 Kb
  • Biological Unit Coordinates (3my0.pdb6.gz) 103 Kb
  • Biological Unit Coordinates (3my0.pdb7.gz) 104 Kb
  • Biological Unit Coordinates (3my0.pdb8.gz) 103 Kb
  • Biological Unit Coordinates (3my0.pdb9.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 3MY0
  • CSU: Contacts of Structural Units for 3MY0
  • Structure Factors (11185 Kb)
  • Retrieve 3MY0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MY0 from S2C, [Save to disk]
  • Re-refined 3my0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MY0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MY0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MY0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3my0_R] [3my0_T] [3my0_M] [3my0] [3my0_J] [3my0_V] [3my0_L] [3my0_X] [3my0_A] [3my0_W] [3my0_B] [3my0_E] [3my0_O] [3my0_N] [3my0_U] [3my0_F] [3my0_D] [3my0_K] [3my0_Q] [3my0_P] [3my0_I] [3my0_C] [3my0_H] [3my0_S] [3my0_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MY0: [STYKc ] by SMART
    • Other resources with information on 3MY0
  • Community annotation for 3MY0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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