3N1Q Protein Binding date May 16, 2010
title Crystal Structure Of Dhhn Bound To Cdofn3
authors J.M.Kavran, D.J.Leahy
compound source
Molecule: Desert Hedgehog Protein
Chain: B, A, E
Fragment: N-Terminal Domain
Synonym: Dhh, Hhg-3, Desert Hedgehog Protein N-Product, Des Hedgehog Protein C-Product;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dhh
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cell Adhesion Molecule-Relateddown-Regulated By
Chain: C, D, F
Fragment: Third Fn3 Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdon, Cdo
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.237 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.715 100.265 97.260 90.00 98.98 90.00
method X-Ray Diffractionresolution 2.89 Å
ligand CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, B


F, D, C


Primary referenceAll mammalian hedgehog proteins interact with CDO and BOC in a conserved manner., Kavran JM, Ward MD, Oladosu OO, Mulepati S, Leahy DJ, J Biol Chem. 2010 Jun 1. PMID:20519495
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (3n1q.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (3n1q.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (3n1q.pdb3.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3N1Q
  • CSU: Contacts of Structural Units for 3N1Q
  • Structure Factors (272 Kb)
  • Retrieve 3N1Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N1Q from S2C, [Save to disk]
  • Re-refined 3n1q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N1Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N1Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3N1Q, from MSDmotif at EBI
  • Fold representative 3n1q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n1q_B] [3n1q_F] [3n1q] [3n1q_C] [3n1q_D] [3n1q_E] [3n1q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3N1Q: [FN3 ] by SMART
  • Other resources with information on 3N1Q
  • Community annotation for 3N1Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science