3NYN Transferase date Jul 15, 2010
title Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In With Sangivamycin
authors J.J.G.Tesmer, P.Singh
compound source
Molecule: G Protein-Coupled Receptor Kinase 6
Chain: A, B
Synonym: G Protein-Coupled Receptor Kinase Grk6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gprk6, Grk6
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_strain: High-Five
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 61
R_factor 0.227 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
154.590 154.590 207.914 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.72 Å
ligand ACE, BU3, SGV, SO4 enzyme Transferase E.C. BRENDA
A, B

Primary referenceMolecular basis for activation of G protein-coupled receptor kinases., Boguth CA, Singh P, Huang CC, Tesmer JJ, EMBO J. 2010 Aug 20. PMID:20729810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (390 Kb) [Save to disk]
  • Biological Unit Coordinates (3nyn.pdb1.gz) 191 Kb
  • Biological Unit Coordinates (3nyn.pdb2.gz) 195 Kb
  • Biological Unit Coordinates (3nyn.pdb3.gz) 383 Kb
  • LPC: Ligand-Protein Contacts for 3NYN
  • CSU: Contacts of Structural Units for 3NYN
  • Structure Factors (745 Kb)
  • Retrieve 3NYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NYN from S2C, [Save to disk]
  • Re-refined 3nyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NYN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NYN, from MSDmotif at EBI
  • Fold representative 3nyn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nyn_A] [3nyn] [3nyn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NYN: [RGS] [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3NYN
  • Community annotation for 3NYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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