3OSE Lipid Binding Protein date Sep 08, 2010
title Structure Of The Kinase Associated Domain 1 (Ka1) From Mark1
authors K.Moravcevic, M.A.Lemmon
compound source
Molecule: Serinethreonine-Protein Kinase Mark1
Chain: A
Fragment: Kinase Associated-1 (Ka1) Domain, Residues 683-79
Synonym: Mapmicrotubule Affinity-Regulating Kinase 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mark1, Kiaa1477, Mark
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.175 R_Free 0.195
length a length b length c angle alpha angle beta angle gamma
69.843 69.843 54.446 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, PEG enzyme Transferase E.C. BRENDA
note 3OSE is a representative structure
Primary referenceKinase associated-1 domains drive MARK/PAR1 kinases to membrane targets by binding acidic phospholipids., Moravcevic K, Mendrola JM, Schmitz KR, Wang YH, Slochower D, Janmey PA, Lemmon MA, Cell. 2010 Dec 10;143(6):966-77. PMID:21145462
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (3ose.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3ose.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3OSE
  • CSU: Contacts of Structural Units for 3OSE
  • Structure Factors (310 Kb)
  • Retrieve 3OSE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OSE from S2C, [Save to disk]
  • Re-refined 3ose structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OSE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OSE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OSE, from MSDmotif at EBI
  • Fold representative 3ose from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ose] [3ose_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OSE
  • Community annotation for 3OSE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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