3P1I Transferase,Signaling Protein date Sep 30, 2010
title Ligand Binding Domain Of Human Ephrin Type-B Receptor 3
authors J.R.Walker, L.Yermekbayeva, A.Seitova, J.Kania, C.Bountra, J.Weig C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound source
Molecule: Ephrin Type-B Receptor 3
Chain: A, B, C
Fragment: Ligand Binding Domain (Unp Residues 39-211)
Synonym: Eph-Like Kinase 2, Ek2, Hek2, Tyrosine-Protein Kin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephb3, Etk2, Hek2, Tyr06, Tyro6
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfhmsp-Lic-C
symmetry Space Group: P 43 21 2
R_factor 0.184 R_Free 0.235
length a length b length c angle alpha angle beta angle gamma
102.160 102.160 117.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CL, SO4 enzyme Transferase E.C. BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (3p1i.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3p1i.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (3p1i.pdb3.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3P1I
  • CSU: Contacts of Structural Units for 3P1I
  • Structure Factors (540 Kb)
  • Retrieve 3P1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P1I from S2C, [Save to disk]
  • Re-refined 3p1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P1I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P1I, from MSDmotif at EBI
  • Fold representative 3p1i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p1i_A] [3p1i_C] [3p1i_B] [3p1i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P1I: [EPH_lbd ] by SMART
  • Other resources with information on 3P1I
  • Community annotation for 3P1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science