3PFF Transferase date Oct 28, 2010
title Truncated Human Atp-Citrate Lyase With Adp And Tartrate Boun
authors M.E.Fraser, T.Sun
compound source
Molecule: Atp-Citrate Synthase
Chain: A
Fragment: Unp Residues 1-817
Synonym: Atp-Citrate (Pro-S-)-Lyase, Citrate Cleavage Enzym
Ec: 2.3.3.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acly
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet42b+
symmetry Space Group: C 1 2 1
R_factor 0.168 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
167.540 61.700 107.980 90.00 125.47 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ADP, MG, TLA enzyme Transferase E.C.2.3.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceADP-Mg2+ bound to the ATP-grasp domain of ATP-citrate lyase., Sun T, Hayakawa K, Fraser ME, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Oct 1;67(Pt 10):1168-72., Epub 2011 Sep 24. PMID:22102020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (3pff.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (3pff.pdb2.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 3PFF
  • CSU: Contacts of Structural Units for 3PFF
  • Structure Factors (2286 Kb)
  • Retrieve 3PFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PFF from S2C, [Save to disk]
  • Re-refined 3pff structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PFF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PFF, from MSDmotif at EBI
  • Fold representative 3pff from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pff] [3pff_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PFF
  • Community annotation for 3PFF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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