3PHD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component C, B, D, A
Primary reference	Protein aggregates are recruited to the aggresome by histone deacetylase 6 via unanchored ubiquitin C-termini., Ouyang H, Ali YO, Ravichandran M, Dong A, Qiu W, Mackenzie F, Dhe-Paganon S, Arrowsmith CH, Zhai RG, J Biol Chem. 2011 Nov 8. PMID:22069321

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (3phd.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 3PHD CSU: Contacts of Structural Units for 3PHD Structure Factors (255 Kb) Retrieve 3PHD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PHD from S2C, [Save to disk] Re-refined 3phd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PHD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3phd] [3phd_A] [3phd_B] [3phd_C] [3phd_D] [3phd_E] [3phd_F] [3phd_G] [3phd_H] SWISS-PROT database: Domains found in 3PHD: [UBQ] [ZnF_UBP ] by SMART

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