3PTZ Oxidoreductase date Dec 03, 2010
title Role Of Packing Defects In The Evolution Of Allostery And In In Human Udp-Glucose Dehydrogenase.
authors R.Kadirvelraj, Z.A.Wood
compound source
Molecule: Udp-Glucose 6-Dehydrogenase
Chain: A, B, C, D, E, F
Synonym: Udp-Glc Dehydrogenase, Udp-Glcdh, Udpgdh
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ugdh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta De3 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
89.100 196.670 111.744 90.00 111.88 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NAD, UDX enzyme Oxidoreductase E.C. BRENDA
F, A, D, C, E, B

Primary referenceRole of Packing Defects in the Evolution of Allostery and Induced Fit in Human UDP-Glucose Dehydrogenase., Kadirvelraj R, Sennett NC, Polizzi SJ, Weitzel S, Wood ZA, Biochemistry. 2011 Jun 3. PMID:21595445
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (464 Kb) [Save to disk]
  • Biological Unit Coordinates (3ptz.pdb1.gz) 454 Kb
  • LPC: Ligand-Protein Contacts for 3PTZ
  • CSU: Contacts of Structural Units for 3PTZ
  • Structure Factors (1919 Kb)
  • Retrieve 3PTZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PTZ from S2C, [Save to disk]
  • Re-refined 3ptz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PTZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PTZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PTZ, from MSDmotif at EBI
  • Fold representative 3ptz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ptz_D] [3ptz_E] [3ptz_F] [3ptz] [3ptz_C] [3ptz_B] [3ptz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PTZ: [UDPG_MGDP_dh_C ] by SMART
  • Other resources with information on 3PTZ
  • Community annotation for 3PTZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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