3PV1 Hydrolase date Dec 06, 2010
title Crystal Structure Of The Usp15 Dusp-Ubl Domains
authors P.R.Elliott, S.Urbe, M.J.Clague, I.L.Barsukov
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 15
Chain: A, B
Fragment: Dusp-Ubl Domain
Synonym: Deubiquitinating Enzyme 15, Ubiquitin Thiolesteras Ubiquitin-Specific-Processing Protease 15, Unph-2, Unph4;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp15, Kiaa0529
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.660 122.980 105.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ACT enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural variability of the ubiquitin specific protease DUSP-UBL double domains., Elliott PR, Liu H, Pastok MW, Grossmann GJ, Rigden DJ, Clague MJ, Urbe S, Barsukov IL, FEBS Lett. 2011 Nov 4;585(21):3385-90. Epub 2011 Oct 10. PMID:22001210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (3pv1.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (3pv1.pdb2.gz) 300 Kb
  • LPC: Ligand-Protein Contacts for 3PV1
  • CSU: Contacts of Structural Units for 3PV1
  • Structure Factors (1055 Kb)
  • Retrieve 3PV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PV1 from S2C, [Save to disk]
  • Re-refined 3pv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PV1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PV1, from MSDmotif at EBI
  • Fold representative 3pv1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pv1_A] [3pv1_B] [3pv1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PV1: [DUSP ] by SMART
  • Other resources with information on 3PV1
  • Community annotation for 3PV1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science