3Q2E Signaling Protein date Dec 20, 2010
title Crystal Structure Of The Second Bromodomain Of Human Bromodo Wd Repeat-Containing Protein 1 Isoform A (Wdr9)
authors P.Filippakopoulos, I.Felletar, S.Picaud, T.Keates, T.Krojer, J.Mu O.Gileadi, F.Von Delft, C.H.Arrowsmith, A.Edwards, J.Weigelt, C. S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain And Wd Repeat-Containing Protein 1
Chain: A
Fragment: Unp Residues 1310-1430
Synonym: Wd Repeat-Containing Protein 9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brwd1, C21orf107, Wdr9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 61 2 2
R_factor 0.185 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.660 51.660 151.360 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.74 Å
ligand ACT enzyme
Primary referenceHistone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3q2e.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3Q2E
  • CSU: Contacts of Structural Units for 3Q2E
  • Structure Factors (187 Kb)
  • Retrieve 3Q2E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q2E from S2C, [Save to disk]
  • Re-refined 3q2e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q2E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q2E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q2E, from MSDmotif at EBI
  • Fold representative 3q2e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q2e] [3q2e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q2E: [BROMO ] by SMART
  • Other resources with information on 3Q2E
  • Community annotation for 3Q2E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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