3Q2Z Transferase Transferase Inhibitor date Dec 21, 2010
title Human Squalene Synthase In Complex With N-[(3r,5s)-7-Chloro- Dimethoxyphenyl)-1-Neopentyl-2-Oxo-1,2,3,5-Tetrahydro-4,1- Benzoxazepine-3-Acetyl]-L-Aspartic Acid
authors M.Suzuki, H.Shimizu, S.Katakura, K.Yamazaki, N.Higashihashi, M.Ic A.Yokomizo, M.Itoh, K.Sugita, H.Usui
compound source
Molecule: Squalene Synthase
Chain: A
Fragment: Unp Residues 31-370
Synonym: Sqs, Ss, Fpp:Fpp Farnesyltransferase, Farnesyl-Dip Farnesyltransferase;
Ec: 2.5.1.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fdft1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.604 60.571 87.028 90.00 117.59 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand D9A, PO4 enzyme Transferase E.C.2.5.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of a new 2-aminobenzhydrol template for highly potent squalene synthase inhibitors., Ichikawa M, Yokomizo A, Itoh M, Sugita K, Usui H, Shimizu H, Suzuki M, Terayama K, Kanda A, Bioorg Med Chem. 2011 Mar 15;19(6):1930-49. Epub 2011 Feb 3. PMID:21353782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3q2z.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3Q2Z
  • CSU: Contacts of Structural Units for 3Q2Z
  • Structure Factors (726 Kb)
  • Retrieve 3Q2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q2Z from S2C, [Save to disk]
  • Re-refined 3q2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q2Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q2Z, from MSDmotif at EBI
  • Fold representative 3q2z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q2z_A] [3q2z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3Q2Z
  • Community annotation for 3Q2Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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