3QIJ Structural Protein date Jan 27, 2011
title Primitive-Monoclinic Crystal Structure Of The Ferm Domain Of 4.1r
authors L.Nedyalkova, N.Zhong, Y.Tong, W.Tempel, C.H.Arrowsmith, A.M.Edwa C.Bountra, J.Weigelt, H.Park, Structural Genomics Consortium (
compound source
Molecule: Protein 4.1
Chain: A, B
Synonym: P4.1, 4.1r, Band 4.1, Epb4.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epb41, E41p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.001 53.469 88.766 90.00 106.96 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (3qij.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (3qij.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3QIJ
  • CSU: Contacts of Structural Units for 3QIJ
  • Structure Factors (754 Kb)
  • Retrieve 3QIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QIJ from S2C, [Save to disk]
  • Re-refined 3qij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QIJ, from MSDmotif at EBI
  • Fold representative 3qij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qij] [3qij_A] [3qij_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3QIJ: [B41] [FERM_C ] by SMART
  • Other resources with information on 3QIJ
  • Community annotation for 3QIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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