3QXY Transferase date Mar 02, 2011
title Human Setd6 In Complex With Rela Lys310
authors Y.Chang, D.Levy, J.R.Horton, J.Peng, X.Zhang, O.Gozani, X.Cheng
compound source
Molecule: N-Lysine Methyltransferase Setd6
Chain: A, B
Synonym: Set Domain-Containing Protein 6
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setd6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pxc862

Molecule: Transcription Factor P65
Chain: P, Q
Fragment: Unp Q04206 Residues 302-316
Synonym: Nuclear Factor Nf-Kappa-B P65 Subunit, Nuclear Fac Kappa Light Polypeptide Gene Enhancer In B-Cells 3;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry Space Group: P 1
R_factor 0.171 R_Free 0.229
length a length b length c angle alpha angle beta angle gamma
61.464 64.985 73.891 78.33 70.05 63.75
method X-Ray Diffractionresolution 2.09 Å
ligand EDO, SAM enzyme Transferase E.C.2.1.1 BRENDA
A, B

Primary referenceStructural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling., Chang Y, Levy D, Horton JR, Peng J, Zhang X, Gozani O, Cheng X, Nucleic Acids Res. 2011 Apr 22. PMID:21515635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (3qxy.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (3qxy.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3QXY
  • CSU: Contacts of Structural Units for 3QXY
  • Structure Factors (1387 Kb)
  • Retrieve 3QXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QXY from S2C, [Save to disk]
  • Re-refined 3qxy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QXY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QXY, from MSDmotif at EBI
  • Fold representative 3qxy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qxy] [3qxy_A] [3qxy_Q] [3qxy_P] [3qxy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QXY: [SET ] by SMART
  • Other resources with information on 3QXY
  • Community annotation for 3QXY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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