OCA Atlas for 3R84

3R84

Transcription

date

Mar 23, 2011

title

Structure Of The Mediator Head Subcomplex Med1122

authors

M.Seizl, L.Lariviere, T.Pfaffenender, L.Wenzeck, P.Cramer

compound

source

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: A, C, E, G, I, K, M, O, Q, S, U, W
Fragment: Residues 21-105
Synonym: Mediator Complex Subunit 11
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Med11, Ym9718.11c, Ymr112c
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b Derivative

Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: B, D, F, H, J, L, N, P, R, T, V, X
Fragment: Residues 2-89
Synonym: Mediator Complex Subunit 22, Suppressor Of Rna Pol 6;
Engineered: Yes
Mutation: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Med22, Srb6, Ybr1721, Ybr253w
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b Derivative

symmetry

Space Group: P 21 21 2

R_factor

0.170

R_Free

0.208

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
148.490	173.790	101.610	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.05 Å

ligand

MSE

enzyme

note

3R84 is a representative structure

Gene
Ontology

Chain	Function	Process	Component
F, T, N, V, L, J, X, P, B, H, D, R
S, K, E, Q, M, C, A, O, W, I, G, U

Primary reference

Mediator head subcomplex Med11/22 contains a common helix bundle building block with a specific function in transcription initiation complex stabilization., Seizl M, Lariviere L, Pfaffeneder T, Wenzeck L, Cramer P, Nucleic Acids Res. 2011 Apr 15. PMID:21498544

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (665 Kb) [Save to disk]