3R84	Structure of the Mediator head subcomplex Med11/22	date
authors	Seizl, M., Lariviere, L., Pfaffenender, T., Wenzeck, L., Cramer, P.
compound		source
symmetry		R_factor R_Free 0.2084
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.05
ligand	MSE	enzyme
note	3R84 is a representative structure
Gene Ontology	Chain Function Process Component F, T, N, V, L, J, X, P, B, H, D, R S, K, E, Q, M, C, A, O, W, I, G, U
Primary reference	Mediator head subcomplex Med11/22 contains a common helix bundle building block with a specific function in transcription initiation complex stabilization., Seizl M, Lariviere L, Pfaffeneder T, Wenzeck L, Cramer P, Nucleic Acids Res. 2011 Apr 15. PMID:21498544

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (665 Kb) [Save to disk] Biological Unit Coordinates (3r84.pdb1.gz) 59 Kb Biological Unit Coordinates (3r84.pdb2.gz) 58 Kb Biological Unit Coordinates (3r84.pdb3.gz) 56 Kb Biological Unit Coordinates (3r84.pdb4.gz) 58 Kb Biological Unit Coordinates (3r84.pdb5.gz) 57 Kb Biological Unit Coordinates (3r84.pdb6.gz) 58 Kb Biological Unit Coordinates (3r84.pdb7.gz) 59 Kb Biological Unit Coordinates (3r84.pdb8.gz) 56 Kb Biological Unit Coordinates (3r84.pdb9.gz) 58 Kb LPC: Ligand-Protein Contacts for 3R84 CSU: Contacts of Structural Units for 3R84 Structure Factors (2100 Kb) Retrieve 3R84 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3R84 from S2C, [Save to disk] Re-refined 3r84 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3R84 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3R84

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3R84, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3r84_D] [3r84_H] [3r84_O] [3r84_S] [3r84_J] [3r84_L] [3r84_M] [3r84_K] [3r84_E] [3r84_G] [3r84_V] [3r84_R] [3r84_B] [3r84_T] [3r84] [3r84_W] [3r84_X] [3r84_P] [3r84_I] [3r84_N] [3r84_Q] [3r84_F] [3r84_A] [3r84_C] [3r84_U] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3R84

Community annotation for 3R84 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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