3RIY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAD, SLL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase., Du J, Zhou Y, Su X, Yu JJ, Khan S, Jiang H, Kim J, Woo J, Kim JH, Choi BH, He B, Chen W, Zhang S, Cerione RA, Auwerx J, Hao Q, Lin H, Science. 2011 Nov 11;334(6057):806-9. PMID:22076378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (3riy.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (3riy.pdb2.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 3RIY
  • CSU: Contacts of Structural Units for 3RIY
  • Structure Factors (1097 Kb)
  • Retrieve 3RIY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RIY from S2C, [Save to disk]
  • Re-refined 3riy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RIY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3riy] [3riy_A] [3riy_B] [3riy_C] [3riy_D]
  • SWISS-PROT database:

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