3RNJ Protein Binding date Apr 22, 2011
title Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
authors P.C.Simister, M.Barilari, J.R.C.Muniz, L.Dente, S.Knapp, F.Von De P.Filippakopoulos, M.Vollmar, A.Chaikuad, J.Raynor, A.Tregubova C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, S.M.Feller, S Genomics Consortium (Sgc)
compound source
Molecule: Brain-Specific Angiogenesis Inhibitor 1-Associate 2;
Chain: A
Fragment: Sh3 Domain, Unp Residues 375-436
Synonym: Bai-Associated Protein 2, Bai1-Associated Protein Bap2, Fas Ligand-Associated Factor 3, Flaf3, Insulin Recept Substrate P53p58, Irs-58, Irsp5358, Insulin Receptor Subs Protein Of 53 Kda, Irsp53, Insulin Receptor Substrate P53;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Baiap2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
29.960 36.640 58.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand EDO, EDT, IPA enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (3rnj.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 3RNJ
  • CSU: Contacts of Structural Units for 3RNJ
  • Structure Factors (76 Kb)
  • Retrieve 3RNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RNJ from S2C, [Save to disk]
  • Re-refined 3rnj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RNJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RNJ, from MSDmotif at EBI
  • Fold representative 3rnj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rnj] [3rnj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RNJ: [SH3 ] by SMART
  • Other resources with information on 3RNJ
  • Community annotation for 3RNJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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