3SDJ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand APJ, SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
G, C, L, A, H, J, D, B, N, I, F, E, K, M


Primary referenceStructural and functional basis for RNA cleavage by Ire1., Korennykh AV, Korostelev AA, Egea PF, Finer-Moore J, Stroud RM, Zhang C, Shokat KM, Walter P, BMC Biol. 2011 Jul 6;9(1):47. PMID:21729333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2075 Kb) [Save to disk]
  • Biological Unit Coordinates (3sdj.pdb1.gz) 2057 Kb
  • Biological Unit Coordinates (3sdj.pdb2.gz) 302 Kb
  • Biological Unit Coordinates (3sdj.pdb3.gz) 307 Kb
  • Biological Unit Coordinates (3sdj.pdb4.gz) 303 Kb
  • Biological Unit Coordinates (3sdj.pdb5.gz) 302 Kb
  • Biological Unit Coordinates (3sdj.pdb6.gz) 302 Kb
  • Biological Unit Coordinates (3sdj.pdb7.gz) 305 Kb
  • Biological Unit Coordinates (3sdj.pdb8.gz) 301 Kb
  • LPC: Ligand-Protein Contacts for 3SDJ
  • CSU: Contacts of Structural Units for 3SDJ
  • Structure Factors (747 Kb)
  • Retrieve 3SDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SDJ from S2C, [Save to disk]
  • Re-refined 3sdj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SDJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sdj] [3sdj_A] [3sdj_B] [3sdj_C] [3sdj_D] [3sdj_E] [3sdj_F] [3sdj_G] [3sdj_H] [3sdj_I] [3sdj_J] [3sdj_K] [3sdj_L] [3sdj_M] [3sdj_N]
  • SWISS-PROT database:
  • Domains found in 3SDJ: [PUG] [STYKc ] by SMART

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