3SDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MES, MG, P3N	enzyme
Gene Ontology	Chain Function Process Component 2, N proteasome core complex, bet... B, P proteasome core complex, alp... C, Q E, S proteasome core complex, alp... F, T I, W endopeptidase activator acti... proteasome core complex, bet... L, Z M, 1 O, A proteasome core complex, alp... R, D proteasome core complex, alp... U, G proteasome core complex, alp... X, J endopeptidase activator acti... proteasome core complex, bet... Y, K, V, H
Primary reference	Optimization of a series of dipeptides with a P3 threonine residue as non-covalent inhibitors of the chymotrypsin-like activity of the human 20S proteasome., Blackburn C, Barrett C, Blank JL, Bruzzese FJ, Bump N, Dick LR, Fleming P, Garcia K, Hales P, Hu Z, Jones M, Liu JX, Sappal DS, Sintchak MD, Tsu C, Gigstad KM, Bioorg Med Chem Lett. 2010 Nov 15;20(22):6581-6. Epub 2010 Sep 15. PMID:20875739

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (976 Kb) [Save to disk] Biological Unit Coordinates (3sdk.pdb1.gz) 968 Kb LPC: Ligand-Protein Contacts for 3SDK CSU: Contacts of Structural Units for 3SDK Structure Factors (4546 Kb) Retrieve 3SDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SDK from S2C, [Save to disk] Re-refined 3sdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sdk] [3sdk_1] [3sdk_2] [3sdk_A] [3sdk_B] [3sdk_C] [3sdk_D] [3sdk_E] [3sdk_F] [3sdk_G] [3sdk_H] [3sdk_I] [3sdk_J] [3sdk_K] [3sdk_L] [3sdk_M] [3sdk_N] [3sdk_O] [3sdk_P] [3sdk_Q] [3sdk_R] [3sdk_S] [3sdk_T] [3sdk_U] [3sdk_V] [3sdk_W] [3sdk_X] [3sdk_Y] [3sdk_Z] SWISS-PROT database: Domain found in 3SDK: [Proteasome_A_N ] by SMART

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