3SH5 Metal Binding Protein date Jun 16, 2011
title Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
authors B.Van Le, K.K.Kim
compound source
Molecule: Lg3 Peptide
Chain: A
Synonym: Laminin-G Like Domain 3, Hspg2
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.301
length a length b length c angle alpha angle beta angle gamma
40.356 48.638 79.367 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA enzyme
Primary referenceCrystal Structure of the LG3 Domain of Endorepellin, an Angiogenesis Inhibitor., V Le B, Kim H, Choi J, Kim JH, Hahn MJ, Lee C, Kim KK, Hwang HY, J Mol Biol. 2011 Nov 25;414(2):231-42. Epub 2011 Oct 4. PMID:21996443
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (3sh5.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3SH5
  • CSU: Contacts of Structural Units for 3SH5
  • Structure Factors (32 Kb)
  • Retrieve 3SH5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SH5 from S2C, [Save to disk]
  • Re-refined 3sh5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SH5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SH5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SH5, from MSDmotif at EBI
  • Fold representative 3sh5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sh5_A] [3sh5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SH5: [LamG ] by SMART
  • Other resources with information on 3SH5
  • Community annotation for 3SH5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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