3SMT Transferase date Jun 28, 2011
title Crystal Structure Of Human Set Domain-Containing Protein3
authors A.Dong, H.Zeng, J.R.Walker, P.Loppnau, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, J.Min, H.Wu, Structural Genomics C (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Setd3
Chain: A
Synonym: Set Domain-Containing Protein 3
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setd3, C14orf154
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)V2rprare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 31 2 1
R_factor 0.208 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.864 113.864 83.570 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.04 Å
ligand ACT, ARS, MSE, PG4, SAM, UNX enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3smt.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (3smt.pdb2.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 3SMT
  • CSU: Contacts of Structural Units for 3SMT
  • Structure Factors (480 Kb)
  • Retrieve 3SMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SMT from S2C, [Save to disk]
  • Re-refined 3smt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SMT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SMT, from MSDmotif at EBI
  • Fold representative 3smt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3smt_A] [3smt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SMT: [SET ] by SMART
  • Other resources with information on 3SMT
  • Community annotation for 3SMT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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