3SOG Structural Protein date Jun 30, 2011
title Crystal Structure Of The Bar Domain Of Human Amphiphysin, Is
authors C.K.Allerston, T.Krojer, A.Chaikuad, C.D.O.Cooper, G.Berridge, P. M.Vollmar, F.Von Delft, C.H.Arrowsmith, J.Weigelt, A.Edwards, C. O.Gileadi, Structural Genomics Consortium (Sgc)
compound source
Molecule: Amphiphysin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Amph, Amph1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 1 2
R_factor 0.239 R_Free 0.266
length a length b length c angle alpha angle beta angle gamma
56.710 56.710 164.790 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand EDO, K enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3sog.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3SOG
  • CSU: Contacts of Structural Units for 3SOG
  • Structure Factors (238 Kb)
  • Retrieve 3SOG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SOG from S2C, [Save to disk]
  • Re-refined 3sog structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SOG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SOG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SOG, from MSDmotif at EBI
  • Fold representative 3sog from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sog] [3sog_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SOG: [BAR ] by SMART
  • Other resources with information on 3SOG
  • Community annotation for 3SOG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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