3SWD E. coli MurA in complex with UDP-N-acetylmuramic acid and covalent adduct of PEP with Cys115 date
authors Zhu, J.Y., Schonbrunn, E.
compound source
symmetry
R_factor
R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand EPZ, IAS, QPA enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceFunctional consequence of the covalent reaction of phosphoenolpyruvate with UDP-N-acetylglucosamine 1-carboxyvinyltransferase (MurA)., Zhu JY, Yang Y, Han H, Betzi S, Olesen S, Marsilio F, Schonbrunn E, J Biol Chem. 2012 Feb 29. PMID:22378791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (804 Kb) [Save to disk]
  • Biological Unit Coordinates (3swd.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (3swd.pdb2.gz) 78 Kb
  • Biological Unit Coordinates (3swd.pdb3.gz) 79 Kb
  • Biological Unit Coordinates (3swd.pdb4.gz) 79 Kb
  • Biological Unit Coordinates (3swd.pdb5.gz) 78 Kb
  • Biological Unit Coordinates (3swd.pdb6.gz) 78 Kb
  • Biological Unit Coordinates (3swd.pdb7.gz) 78 Kb
  • Biological Unit Coordinates (3swd.pdb8.gz) 78 Kb
  • Biological Unit Coordinates (3swd.pdb9.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3SWD
  • CSU: Contacts of Structural Units for 3SWD
  • Structure Factors (1285 Kb)
  • Retrieve 3SWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SWD from S2C, [Save to disk]
  • Re-refined 3swd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SWD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SWD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3swd_L] [3swd_G] [3swd_J] [3swd_F] [3swd_D] [3swd_I] [3swd_A] [3swd_K] [3swd_H] [3swd_E] [3swd] [3swd_C] [3swd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SWD
  • Community annotation for 3SWD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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