3SWD	E. coli MurA in complex with UDP-N-acetylmuramic acid and covalent adduct of PEP with Cys115	date
authors	Zhu, J.Y., Schonbrunn, E.
compound		source
symmetry		R_factor R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.50
ligand	EPZ, IAS, QPA	enzyme
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Functional consequence of the covalent reaction of phosphoenolpyruvate with UDP-N-acetylglucosamine 1-carboxyvinyltransferase (MurA)., Zhu JY, Yang Y, Han H, Betzi S, Olesen S, Marsilio F, Schonbrunn E, J Biol Chem. 2012 Feb 29. PMID:22378791

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (804 Kb) [Save to disk] Biological Unit Coordinates (3swd.pdb1.gz) 78 Kb Biological Unit Coordinates (3swd.pdb2.gz) 78 Kb Biological Unit Coordinates (3swd.pdb3.gz) 79 Kb Biological Unit Coordinates (3swd.pdb4.gz) 79 Kb Biological Unit Coordinates (3swd.pdb5.gz) 78 Kb Biological Unit Coordinates (3swd.pdb6.gz) 78 Kb Biological Unit Coordinates (3swd.pdb7.gz) 78 Kb Biological Unit Coordinates (3swd.pdb8.gz) 78 Kb Biological Unit Coordinates (3swd.pdb9.gz) 78 Kb LPC: Ligand-Protein Contacts for 3SWD CSU: Contacts of Structural Units for 3SWD Structure Factors (1285 Kb) Retrieve 3SWD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SWD from S2C, [Save to disk] Re-refined 3swd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SWD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SWD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SWD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3swd_L] [3swd_G] [3swd_J] [3swd_F] [3swd_D] [3swd_I] [3swd_A] [3swd_K] [3swd_H] [3swd_E] [3swd] [3swd_C] [3swd_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3SWD

Community annotation for 3SWD at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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