3T9L Hydrolase date Aug 03, 2011
title Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15
authors S.Harper, T.M.D.Besong, J.Emsley, D.J.Scott, I.Dreveny
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 15
Chain: A
Fragment: Unp Residues 1-222
Synonym: Deubiquitinating Enzyme 15, Ubiquitin Thiolesteras Ubiquitin-Specific-Processing Protease 15, Unph-2, Unph4;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0529, Usp15, Usp15 (1-222)
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 31 2 1
R_factor 0.156 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.601 97.601 69.398 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand SO4 enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the USP15 N-Terminal Domains: A beta-Hairpin Mediates Close Association between the DUSP and UBL Domains., Harper S, Besong TM, Emsley J, Scott DJ, Dreveny I, Biochemistry. 2011 Sep 20;50(37):7995-8004. Epub 2011 Aug 26. PMID:21848306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3t9l.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 3T9L
  • CSU: Contacts of Structural Units for 3T9L
  • Structure Factors (953 Kb)
  • Retrieve 3T9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T9L from S2C, [Save to disk]
  • Re-refined 3t9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T9L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3T9L, from MSDmotif at EBI
  • Fold representative 3t9l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t9l] [3t9l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3T9L: [DUSP ] by SMART
  • Other resources with information on 3T9L
  • Community annotation for 3T9L at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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