3TOJ Transcription date Sep 05, 2011
title Structure Of The Spry Domain Of Human Ash2l
authors Y.Chen, F.Cao, B.Wan, Y.Dou, M.Lei
compound source
Molecule: Set1ash2 Histone Methyltransferase Complex Subun
Chain: A, B
Fragment: Ash2l Spry Domain, Unp Residues 370-496, 539-617
Synonym: Ash2-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ash2l, Ash2l1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.176 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.289 115.289 105.780 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the SPRY domain of human Ash2L and its interactions with RbBP5 and DPY30., Chen Y, Cao F, Wan B, Dou Y, Lei M, Cell Res. 2012 Jan 10. doi: 10.1038/cr.2012.9. PMID:22231628
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3toj.pdb1.gz) 136 Kb
  • CSU: Contacts of Structural Units for 3TOJ
  • Structure Factors (338 Kb)
  • Retrieve 3TOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TOJ from S2C, [Save to disk]
  • Re-refined 3toj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TOJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TOJ, from MSDmotif at EBI
  • Fold representative 3toj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3toj] [3toj_B] [3toj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TOJ: [SPRY ] by SMART
  • Other resources with information on 3TOJ
  • Community annotation for 3TOJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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