3TOW Protein Transport date Sep 06, 2011
title Crystal Structure Of The Mabp Domain Of Mvb12b Of Human Escr Complex
authors E.Boura, J.H.Hurley
compound source
Molecule: Multivesicular Body Subunit 12b
Chain: A
Fragment: Unp Residues 47-192
Synonym: Escrt-I Complex Subunit Mvb12b, Protein Fam125b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C9orf28, Fam125b, Mvb12b
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfd
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.371 52.607 71.388 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.34 Å
note 3TOW is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for membrane targeting by the MVB12-associated beta-prism domain of the human ESCRT-I MVB12 subunit., Boura E, Hurley JH, Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):1901-6. Epub 2012 Jan 9. PMID:22232651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3tow.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 3TOW
  • Structure Factors (594 Kb)
  • Retrieve 3TOW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TOW from S2C, [Save to disk]
  • Re-refined 3tow structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TOW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TOW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TOW, from MSDmotif at EBI
  • Fold representative 3tow from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tow_A] [3tow]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TOW
  • Community annotation for 3TOW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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