3UEO Peptide Binding Protein date Oct 31, 2011
title Crystal Structure Of Topbp1 Brct45 Domains In Complex With Peptide
authors C.C.Leung, J.N.M.Glover
compound source
Molecule: Dna Topoisomerase 2-Binding Protein 1
Chain: A, B, C, D
Fragment: Brct Domain
Synonym: Dna Topoisomerase II-Beta-Binding Protein 1, Topbp Topoisomerase II-Binding Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0259, Topbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex

Molecule: Phospho-Peptide
Chain: E, F
Engineered: Yes

Synthetic: Yes
Other_details: This Represents A Consensus Sequence In Huma
symmetry Space Group: P 1
R_factor 0.190 R_Free 0.234
length a length b length c angle alpha angle beta angle gamma
58.810 59.100 78.310 102.05 98.04 114.34
method X-Ray Diffractionresolution 2.60 Å
ligand SEP, TPO enzyme
Primary referenceStructural insights into recognition of MDC1 by TopBP1 in DNA replication checkpoint control., Leung CC, Sun L, Gong Z, Burkat M, Edwards R, Assmus M, Chen J, Glover JN, Structure. 2013 Aug 6;21(8):1450-9. doi: 10.1016/j.str.2013.06.015. Epub 2013 Jul, 25. PMID:23891287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (3ueo.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (3ueo.pdb2.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3UEO
  • CSU: Contacts of Structural Units for 3UEO
  • Structure Factors (444 Kb)
  • Retrieve 3UEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UEO from S2C, [Save to disk]
  • Re-refined 3ueo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UEO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UEO, from MSDmotif at EBI
  • Fold representative 3ueo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ueo_B] [3ueo_F] [3ueo_E] [3ueo] [3ueo_C] [3ueo_A] [3ueo_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UEO: [BRCT ] by SMART
  • Other resources with information on 3UEO
  • Community annotation for 3UEO at PDBWiki (http://pdbwiki.org)

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