3UPC date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 1PE, PEG, PG4, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
G, B, F, E, I, A, J, H, C, D


Primary referenceGeneral strategy for the generation of human antibody variable domains with increased aggregation resistance., Dudgeon K, Rouet R, Kokmeijer I, Schofield P, Stolp J, Langley D, Stock D, Christ D, Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10879-84. Epub 2012 Jun 27. PMID:22745168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (3upc.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3upc.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (3upc.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (3upc.pdb4.gz) 35 Kb
  • Biological Unit Coordinates (3upc.pdb5.gz) 34 Kb
  • Biological Unit Coordinates (3upc.pdb6.gz) 35 Kb
  • Biological Unit Coordinates (3upc.pdb7.gz) 35 Kb
  • Biological Unit Coordinates (3upc.pdb8.gz) 35 Kb
  • Biological Unit Coordinates (3upc.pdb9.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3UPC
  • CSU: Contacts of Structural Units for 3UPC
  • Structure Factors (2245 Kb)
  • Retrieve 3UPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UPC from S2C, [Save to disk]
  • Re-refined 3upc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3upc] [3upc_A] [3upc_B] [3upc_C] [3upc_D] [3upc_E] [3upc_F] [3upc_G] [3upc_H] [3upc_I] [3upc_J]
  • SWISS-PROT database:
  • Domain found in 3UPC: [IGv ] by SMART

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