3UTL Hydrolase date Nov 25, 2011
title Human Pepsin 3b
authors A.Coker, J.B.Cooper
compound source
Molecule: Pepsin A
Chain: A
Fragment: Unp Residues 63-388
Ec: 3.4.23.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.130 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.890 75.270 87.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand
enzyme Hydrolase E.C.3.4.23.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn analysis of subdomain orientation, conformational change and disorder in relation to crystal packing of aspartic proteinases., Bailey D, Carpenter EP, Coker A, Coker S, Read J, Jones AT, Erskine P, Aguilar CF, Badasso M, Toldo L, Rippmann F, Sanz-Aparicio J, Albert A, Blundell TL, Roberts NB, Wood SP, Cooper JB, Acta Crystallogr D Biol Crystallogr. 2012 May;68(Pt 5):541-52. Epub 2012 Apr 17. PMID:22525752
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3utl.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 3UTL
  • Structure Factors (150 Kb)
  • Retrieve 3UTL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UTL from S2C, [Save to disk]
  • Re-refined 3utl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UTL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UTL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UTL, from MSDmotif at EBI
  • Fold representative 3utl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3utl] [3utl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UTL
  • Community annotation for 3UTL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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