3V2B Transferase date Dec 12, 2011
title Human Poly(Adp-Ribose) Polymerase 15 (Artd7, Bal3), Macro Do Complex With Adenosine-5-Diphosphoribose
authors T.Karlberg, M.Moche, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Col A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Jo A.Kallas, T.Kotenyova, A.Kotzcsh, P.Kraulis, T.K.Nielsen, P.Nord T.Nyman, C.Persson, A.K.Roos, P.Schutz, M.I.Siponen, A.G.Thorsel L.Tresaugues, S.Van Den Berg, J.Weigelt, M.Welin, M.Wisniewska, H.Schuler, Structural Genomics Consortium (Sgc)
compound source
Molecule: Poly [Adp-Ribose] Polymerase 15
Chain: A
Fragment: Macro Domain 2
Synonym: Parp-15, B-Aggressive Lymphoma Protein 3
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bal3, Parp15
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.173 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.102 91.187 62.851 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand AR6 enzyme Transferase E.C.2.4.2.30 BRENDA
note 3V2B supersedes 3KH6
Primary referenceRecognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains., Forst AH, Karlberg T, Herzog N, Thorsell AG, Gross A, Feijs KL, Verheugd P, Kursula P, Nijmeijer B, Kremmer E, Kleine H, Ladurner AG, Schuler H, Luscher B, Structure. 2013 Mar 5;21(3):462-75. doi: 10.1016/j.str.2012.12.019. PMID:23473667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3v2b.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (3v2b.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3V2B
  • CSU: Contacts of Structural Units for 3V2B
  • Structure Factors (82 Kb)
  • Retrieve 3V2B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V2B from S2C, [Save to disk]
  • Re-refined 3v2b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V2B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V2B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V2B, from MSDmotif at EBI
  • Fold representative 3v2b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v2b] [3v2b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V2B: [A1pp ] by SMART
  • Other resources with information on 3V2B
  • Community annotation for 3V2B at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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