3V2W Hydrolase date Dec 12, 2011
title Crystal Structure Of A Lipid G Protein-Coupled Receptor At 3
authors M.A.Hanson, C.B.Roth, E.Jo, M.T.Griffith, F.L.Scott, G.Reinhart, H B.Clemons, S.M.Cahalan, S.C.Schuerer, M.G.Sanna, G.W.Han, P.Kuhn R.C.Stevens, Gpcr Network (Gpcr)
compound source
Molecule: Sphingosine 1-Phosphate Receptor 1, Lysozyme Chim
Chain: A
Synonym: S1p1,Endothelial Differentiation G-Protein Coupled 1,Sphingosine 1-Phosphate Receptor Edg-1,S1p Receptor Edg-1 Protein,Lysozyme,Muramidase;
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: S1pr1, Chedg1, Edg1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 2
R_factor 0.224 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.940 69.700 81.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.35 Å
ligand ML5, NAG BindingDB enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene S1PR1 (H. sapiens)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a lipid G protein-coupled receptor., Hanson MA, Roth CB, Jo E, Griffith MT, Scott FL, Reinhart G, Desale H, Clemons B, Cahalan SM, Schuerer SC, Sanna MG, Han GW, Kuhn P, Rosen H, Stevens RC, Science. 2012 Feb 17;335(6070):851-5. PMID:22344443
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (3v2w.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 3V2W
  • CSU: Contacts of Structural Units for 3V2W
  • Structure Factors (176 Kb)
  • Retrieve 3V2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V2W from S2C, [Save to disk]
  • Re-refined 3v2w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V2W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V2W, from MSDmotif at EBI
  • Fold representative 3v2w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v2w_A] [3v2w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V2W
  • Community annotation for 3V2W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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