3V2Y Hydrolase date Dec 12, 2011
title Crystal Structure Of A Lipid G Protein-Coupled Receptor At 2
authors M.A.Hanson, C.B.Roth, E.Jo, M.T.Griffith, F.L.Scott, G.Reinhart, H B.Clemons, S.M.Cahalan, S.C.Schuerer, M.G.Sanna, G.W.Han, P.Kuhn R.C.Stevens, Gpcr Network (Gpcr)
compound source
Molecule: Sphingosine 1-Phosphate Receptor 1, Lysozyme Chim (E.C.;
Chain: A
Synonym: S1p1,Endothelial Differentiation G-Protein Coupled 1,Sphingosine 1-Phosphate Receptor Edg-1,S1p Receptor Edg-1 Protein,Lysozyme,Muramidase;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: S1pr1, Chedg1, Edg1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 2
R_factor 0.229 R_Free 0.272
length a length b length c angle alpha angle beta angle gamma
107.940 69.700 81.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ML5, NAG BindingDB enzyme Hydrolase E.C. BRENDA
Gene S1PR1 (H. sapiens)

Primary referenceCrystal structure of a lipid G protein-coupled receptor., Hanson MA, Roth CB, Jo E, Griffith MT, Scott FL, Reinhart G, Desale H, Clemons B, Cahalan SM, Schuerer SC, Sanna MG, Han GW, Kuhn P, Rosen H, Stevens RC, Science. 2012 Feb 17;335(6070):851-5. PMID:22344443
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (3v2y.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 3V2Y
  • CSU: Contacts of Structural Units for 3V2Y
  • Structure Factors (329 Kb)
  • Retrieve 3V2Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V2Y from S2C, [Save to disk]
  • Re-refined 3v2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V2Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V2Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V2Y, from MSDmotif at EBI
  • Fold representative 3v2y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v2y] [3v2y_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V2Y
  • Community annotation for 3V2Y at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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