3V42 Protein Binding date Dec 14, 2011
title Crystal Structure Of Renal Tumor Suppressor Protein, Follicu
authors R.K.Nookala, D.Y.Chirgadze, T.L.Blundell
compound source
Molecule: Folliculin
Chain: A, B
Fragment: C-Terminal Domain, Unp Residues 341-566
Synonym: Bhd Skin Lesion Fibrofolliculoma Protein, Birt-Hog Syndrome Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bhd, Flcn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star
Expression_system_vector_type: Gateway Destination Vector
Expression_system_plasmid: Petg10a
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.268
length a length b length c angle alpha angle beta angle gamma
86.050 99.951 107.584 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
A, B

Primary referenceCrystal structure of folliculin reveals a hidDENN function in genetically inherited renal cancer., Nookala RK, Langemeyer L, Pacitto A, Ochoa-Montano B, Donaldson JC, Blaszczyk BK, Chirgadze DY, Barr FA, Bazan JF, Blundell TL, Open Biol. 2012 Aug;2(8):120071. PMID:22977732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (3v42.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3v42.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (3v42.pdb3.gz) 131 Kb
  • CSU: Contacts of Structural Units for 3V42
  • Structure Factors (478 Kb)
  • Retrieve 3V42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V42 from S2C, [Save to disk]
  • Re-refined 3v42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V42
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V42, from MSDmotif at EBI
  • Fold representative 3v42 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v42_A] [3v42_B] [3v42]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V42
  • Community annotation for 3V42 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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