3V5Y Gene Regulation date Dec 17, 2011
title Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
authors D.R.Tomchick, R.K.Bruick, J.W.Thompson, C.A.Brautigam
compound source
Molecule: F-Boxlrr-Repeat Protein 5
Chain: A, B, C, D
Fragment: Hemerythrin Domain (Unp Residues 1-161)
Synonym: F-Box And Leucine-Rich Repeat Protein 5, F-Box Pro Fbl4fbl5, P45skp2-Like Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fbl4, Fbl5, Fbxl5, Flr1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst-Parallel
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.270
length a length b length c angle alpha angle beta angle gamma
76.257 54.373 78.215 90.00 90.02 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FEO enzyme
Primary referenceStructural and molecular characterization of the iron-sensing hemerythrin-like domain within F-box and leucine-rich repeat protein 5 (FBXL5)., Thompson JW, Salahudeen AA, Chollangi S, Ruiz JC, Brautigam CA, Makris TM, Lipscomb JD, Tomchick DR, Bruick RK, J Biol Chem. 2012 Jan 17. PMID:22253436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]
  • Biological Unit Coordinates (3v5y.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (3v5y.pdb2.gz) 80 Kb
  • Biological Unit Coordinates (3v5y.pdb3.gz) 82 Kb
  • Biological Unit Coordinates (3v5y.pdb4.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3V5Y
  • CSU: Contacts of Structural Units for 3V5Y
  • Structure Factors (273 Kb)
  • Retrieve 3V5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V5Y from S2C, [Save to disk]
  • Re-refined 3v5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V5Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V5Y, from MSDmotif at EBI
  • Fold representative 3v5y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v5y_C] [3v5y_D] [3v5y_A] [3v5y] [3v5y_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V5Y
  • Community annotation for 3V5Y at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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