3V6C Hydrolase Signaling Protein date Dec 19, 2011
title Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin
authors M.Neculai, A.Ernst, S.Sidhu, C.H.Arrowsmith, A.M.Edwards, C.Bount J.Weigelt, S.Dhe-Paganon, Structural Genomics Consortium (Sgc
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 2
Chain: A
Synonym: 41 Kda Ubiquitin-Specific Protease, Deubiquitinati 2, Ubiquitin Thiolesterase 2, Ubiquitin-Specific-Processing 2;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubp41, Usp02.258.605, Usp2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28lic

Molecule: Ubiquitin
Chain: B
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet53
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.735 84.077 86.915 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, GOL, ZN enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (3v6c.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 3V6C
  • CSU: Contacts of Structural Units for 3V6C
  • Structure Factors (3266 Kb)
  • Retrieve 3V6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V6C from S2C, [Save to disk]
  • Re-refined 3v6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V6C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V6C, from MSDmotif at EBI
  • Fold representative 3v6c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v6c] [3v6c_A] [3v6c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V6C: [UBQ ] by SMART
  • Other resources with information on 3V6C
  • Community annotation for 3V6C at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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