3V9I Oxidoreductase date Dec 27, 2011
title Crystal Structure Of Human 1-Pyrroline-5-Carboxylate Dehydro Mutant S352l
authors J.J.Tanner, R.K.Singh
compound source
Molecule: Delta-1-Pyrroline-5-Carboxylate Dehydrogenase, Mitochondrial;
Chain: A, B, C, D
Fragment: Unp Residues 18-563
Synonym: 1-Pyrroline-5-Carboxylate Dehydrogenase, P5c Dehyd Aldehyde Dehydrogenase Family 4 Member A1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh4, Aldh4a1, P5cdh
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65
R_factor 0.209 R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
150.382 150.382 192.518 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
enzyme Oxidoreductase E.C. BRENDA
A, D, C, B
  • electron transfer activity

  • Primary referenceThe Three-Dimensional Structural Basis of Type II Hyperprolinemia., Srivastava D, Singh RK, Moxley MA, Henzl MT, Becker DF, Tanner JJ, J Mol Biol. 2012 Apr 16. PMID:22516612
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (598 Kb) [Save to disk]
  • Biological Unit Coordinates (3v9i.pdb1.gz) 310 Kb
  • Biological Unit Coordinates (3v9i.pdb2.gz) 283 Kb
  • CSU: Contacts of Structural Units for 3V9I
  • Structure Factors (438 Kb)
  • Retrieve 3V9I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V9I from S2C, [Save to disk]
  • Re-refined 3v9i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 3V9I
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V9I, from MSDmotif at EBI
  • Fold representative 3v9i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v9i_C] [3v9i_D] [3v9i] [3v9i_B] [3v9i_A]
  • SWISS-PROT database:
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