3VI3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, CA, MAN, MG, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A


D, B


Primary referenceCrystal structure of alpha5beta1 integrin ectodomain: Atomic details of the fibronectin receptor., Nagae M, Re S, Mihara E, Nogi T, Sugita Y, Takagi J, J Cell Biol. 2012 Apr 2;197(1):131-40. Epub 2012 Mar 26. PMID:22451694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • Biological Unit Coordinates (3vi3.pdb1.gz) 232 Kb
  • Biological Unit Coordinates (3vi3.pdb2.gz) 231 Kb
  • LPC: Ligand-Protein Contacts for 3VI3
  • CSU: Contacts of Structural Units for 3VI3
  • Structure Factors (2214 Kb)
  • Retrieve 3VI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VI3 from S2C, [Save to disk]
  • Re-refined 3vi3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vi3] [3vi3_A] [3vi3_B] [3vi3_C] [3vi3_D] [3vi3_E] [3vi3_F] [3vi3_H] [3vi3_L]
  • SWISS-PROT database:
  • Domains found in 3VI3: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

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