3VNH Protein Binding date Jan 12, 2012
title Crystal Structure Of Keap1 Soaked With Synthetic Small Molec
authors N.Kunishima, T.Tanaka, M.Satoh, H.Saburi
compound source
Molecule: Kelch-Like Ech-Associated Protein 1
Chain: A
Fragment: Unp Residues 321-609
Synonym: Cytosolic Inhibitor Of Nrf2, Inrf2, Kelch-Like Pro
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Keap1, Inrf2, Kiaa0132, Klhl19
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pta2
symmetry Space Group: P 65 2 2
R_factor 0.201 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.368 85.368 145.903 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand FUU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3vnh.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3VNH
  • CSU: Contacts of Structural Units for 3VNH
  • Structure Factors (270 Kb)
  • Retrieve 3VNH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VNH from S2C, [Save to disk]
  • Re-refined 3vnh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VNH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VNH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3VNH, from MSDmotif at EBI
  • Fold representative 3vnh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vnh] [3vnh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VNH: [Kelch ] by SMART
  • Other resources with information on 3VNH
  • Community annotation for 3VNH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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