3VON Crystalstructure of the ubiquitin protease date
authors Sato, Y., Fukai, S.
compound source
symmetry
R_factor
R_Free 0.28060
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.15
Gene
Ontology
ChainFunctionProcessComponent
S, N, E, Z, g, e, J, b, G, U, Q, C, L, i, n, X, l, p


a, T, K, d, Y, k, W, B, D, I, F, h, M, f, P, m, R, o


j, H, c, V, A, O


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2207 Kb) [Save to disk]
  • Biological Unit Coordinates (3von.pdb1.gz) 180 Kb
  • Biological Unit Coordinates (3von.pdb2.gz) 108 Kb
  • Biological Unit Coordinates (3von.pdb3.gz) 106 Kb
  • Biological Unit Coordinates (3von.pdb4.gz) 184 Kb
  • Biological Unit Coordinates (3von.pdb5.gz) 106 Kb
  • Biological Unit Coordinates (3von.pdb6.gz) 105 Kb
  • Biological Unit Coordinates (3von.pdb7.gz) 182 Kb
  • Biological Unit Coordinates (3von.pdb8.gz) 107 Kb
  • Biological Unit Coordinates (3von.pdb9.gz) 106 Kb
  • CSU: Contacts of Structural Units for 3VON
  • Structure Factors (1822 Kb)
  • Retrieve 3VON in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VON from S2C, [Save to disk]
  • Re-refined 3von structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VON in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VON
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VON, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3von_P] [3von_R] [3von_Q] [3von_e] [3von_o] [3von_W] [3von_A] [3von_i] [3von_n] [3von_g] [3von_l] [3von_S] [3von_b] [3von_M] [3von_L] [3von_U] [3von] [3von_H] [3von_X] [3von_F] [3von_T] [3von_G] [3von_K] [3von_f] [3von_m] [3von_d] [3von_c] [3von_V] [3von_k] [3von_J] [3von_h] [3von_I] [3von_j] [3von_N] [3von_a] [3von_Z] [3von_O] [3von_C] [3von_B] [3von_E] [3von_D] [3von_Y] [3von_p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VON: [UBCc ] by SMART
    • Other resources with information on 3VON
  • Community annotation for 3VON at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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