3VYK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, EDO, MAN, MMA, NAG, SO4 enzyme
Primary referenceRecognition of Bisecting N-Acetylglucosamine: STRUCTURAL BASIS FOR ASYMMETRIC INTERACTION WITH THE MOUSE LECTIN DENDRITIC CELL INHIBITORY RECEPTOR 2., Nagae M, Yamanaka K, Hanashima S, Ikeda A, Morita-Matsumoto K, Satoh T, Matsumoto N, Yamamoto K, Yamaguchi Y, J Biol Chem. 2013 Nov 22;288(47):33598-610. doi: 10.1074/jbc.M113.513572. Epub, 2013 Oct 9. PMID:24108122
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3vyk.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 3VYK
  • CSU: Contacts of Structural Units for 3VYK
  • Structure Factors (915 Kb)
  • Retrieve 3VYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VYK from S2C, [Save to disk]
  • Re-refined 3vyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vyk] [3vyk_A]
  • SWISS-PROT database:
  • Domain found in 3VYK: [CLECT ] by SMART

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