3WF6	Transferase Transferase Inhibitor	date	Jul 17, 2013
title	Crystal Structure Of S6k1 Kinase Domain In Complex With A Pyrazolopyrimidine Derivative 4-[4-(1h-Indol-3-Yl)-3,6- Dihydropyridin-1(2h)-Yl]-1h-Pyrazolo[3,4-D]Pyrimidine
authors	H.Niwa, M.Shirouzu, S.Yokoyama
compound		source
Molecule: Ribosomal Protein S6 Kinase Beta-1 Chain: A Fragment: Unp Residues 78-399 Synonym: S6k-Beta-1, S6k1, 70 Kda Ribosomal Protein S6 Kina Ribosomal Protein S6 Kinase I, Serinethreonine-Protein Kin P70 Ribosomal S6 Kinase Alpha; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rps6kb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 41 21 2	R_factor 0.195 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.073 69.073 144.983 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.03 Å
ligand	FZ9, TPO, ZN	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of the S6K1 kinase domain in complexes with inhibitors., Niwa H, Mikuni J, Sasaki S, Tomabechi Y, Honda K, Ikeda M, Ohsawa N, Wakiyama M, Handa N, Shirouzu M, Honma T, Tanaka A, Yokoyama S, J Struct Funct Genomics. 2014 Sep;15(3):153-164. Epub 2014 Jul 31. PMID:25078151

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (3wf6.pdb1.gz) 98 Kb LPC: Ligand-Protein Contacts for 3WF6 CSU: Contacts of Structural Units for 3WF6 Structure Factors (1138 Kb) Retrieve 3WF6 in mmCIF format [Save to disk] Re-refined 3wf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WF6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WF6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WF6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wf6_A] [3wf6] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3WF6: [S_TK_X] [S_TKc ] by SMART

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