3WST Transferase date Mar 21, 2014
title Crystal Structure Of C.Elegans Prmt7 In Complex With Sah(P31
authors M.Hasegawa, S.Toma-Fukai, T.Shimizu
compound source
Molecule: Protein Arginine N-Methyltransferase 7
Chain: A, D, B, C, F, E, G, H, I, M, N, O, P, Q, R, J, K, L
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_common: Roundworm
Organism_taxid: 6239
Gene: Pmrt-2, Prmt-7, W06d4.4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor 0.234 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
190.703 190.703 373.088 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.39 Å
ligand PO4, SAH enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G
  • protein-arginine N-methyltra...
  • protein-arginine omega-N mon...


  • Primary referenceProtein arginine methyltransferase 7 has a novel homodimer-like structure formed by tandem repeats., Hasegawa M, Toma-Fukai S, Kim JD, Fukamizu A, Shimizu T, FEBS Lett. 2014 Apr 9. pii: S0014-5793(14)00272-5. doi:, 10.1016/j.febslet.2014.03.053. PMID:24726727
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1843 Kb) [Save to disk]
  • Biological Unit Coordinates (3wst.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (3wst.pdb2.gz) 123 Kb
  • Biological Unit Coordinates (3wst.pdb3.gz) 122 Kb
  • Biological Unit Coordinates (3wst.pdb4.gz) 123 Kb
  • Biological Unit Coordinates (3wst.pdb5.gz) 123 Kb
  • Biological Unit Coordinates (3wst.pdb6.gz) 122 Kb
  • Biological Unit Coordinates (3wst.pdb7.gz) 122 Kb
  • Biological Unit Coordinates (3wst.pdb8.gz) 124 Kb
  • Biological Unit Coordinates (3wst.pdb9.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 3WST
  • CSU: Contacts of Structural Units for 3WST
  • Structure Factors (11578 Kb)
  • Retrieve 3WST in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WST from S2C, [Save to disk]
  • Re-refined 3wst structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WST in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WST
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WST, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wst_E] [3wst_C] [3wst_M] [3wst_P] [3wst] [3wst_G] [3wst_D] [3wst_K] [3wst_L] [3wst_Q] [3wst_O] [3wst_N] [3wst_H] [3wst_F] [3wst_B] [3wst_I] [3wst_R] [3wst_J] [3wst_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3WST
  • Community annotation for 3WST at PDBWiki (http://pdbwiki.org)

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