3WWT Transcription Viral Protein date Jun 27, 2014
title Crystal Structure Of The Y3:Stat1nd Complex
authors T.Sakaguchi, K.Oda, Y.Matoba
compound source
Molecule: Signal Transducer And Activator Of Transcription Alphabeta;
Chain: A
Fragment: N-Terminal Domain, Unp Residues 1-126
Synonym: Transcription Factor Isgf-3 Components P91p84
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stat1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcold Pros2

Molecule: Protein C'
Chain: B
Fragment: Unp Residues 109-215
Synonym: Protein C, Protein Y1, Protein Y2
Engineered: Yes

Organism_scientific: Sendai Virus
Organism_common: Sev
Organism_taxid: 11198
Strain: Z
Gene: C, Pvc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcold Pros2
symmetry Space Group: P 65 2 2
R_factor 0.229 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.270 72.270 197.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3wwt.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3WWT
  • CSU: Contacts of Structural Units for 3WWT
  • Structure Factors (180 Kb)
  • Retrieve 3WWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WWT from S2C, [Save to disk]
  • Re-refined 3wwt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WWT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 3wwt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wwt_B] [3wwt_A] [3wwt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WWT: [STAT_int ] by SMART
  • Other resources with information on 3WWT
  • Community annotation for 3WWT at PDBWiki (http://pdbwiki.org)

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