3ZD1 Immune System date Nov 23, 2012
title Structure Of The Two C-Terminal Domains Of Complement Factor H Related Protein 2
authors J.J.E.Caesar, E.Goicoechea De Jorge, M.C.Pickering, S.M.Lea
compound source
Molecule: Complement Factor H-Related Protein 2
Chain: A, B
Fragment: Scr Domains 3 And 4, Residues 147-270
Synonym: Fhr-2, Ddesk59, H Factor-Like 3, H Factor-Like Pro
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-15b
symmetry Space Group: P 1 2 1
R_factor 0.2106 R_Free 0.2400
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.950 25.180 95.680 90.00 93.80 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EDO enzyme
Primary referenceDimerization of complement factor H-related proteins modulates complement activation in vivo., Goicoechea de Jorge E, Caesar JJ, Malik TH, Patel M, Colledge M, Johnson S, Hakobyan S, Morgan BP, Harris CL, Pickering MC, Lea SM, Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4685-90. doi:, 10.1073/pnas.1219260110. Epub 2013 Mar 4. PMID:23487775
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3zd1.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (3zd1.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3ZD1
  • CSU: Contacts of Structural Units for 3ZD1
  • Structure Factors (202 Kb)
  • Retrieve 3ZD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZD1 from S2C, [Save to disk]
  • Re-refined 3zd1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZD1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZD1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m3zd1, region D:3-268 [Jmol] [rasmolscript] [script source]
  • Fold representative 3zd1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zd1] [3zd1_B] [3zd1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZD1: [CCP ] by SMART
  • Other resources with information on 3ZD1
  • Community annotation for 3ZD1 at PDBWiki (http://pdbwiki.org)

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