3ZPV Crystal structure of Drosophila Pygo PHD finger in complex with Legless HD1 domain date
authors Miller, T.C.R., Mieszczanek, J., Sanchez-Barrena, M.J., Rutherford, T.J., Fiedler, M., Bienz, M.
compound source
symmetry
R_factor
R_Free 0.26231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.68
ligand ZN enzyme
Primary referenceEvolutionary Adaptation of the Fly Pygo PHD Finger toward Recognizing Histone H3 Tail Methylated at Arginine 2., Miller TC, Mieszczanek J, Sanchez-Barrena MJ, Rutherford TJ, Fiedler M, Bienz M, Structure. 2013 Oct 30. pii: S0969-2126(13)00364-X. doi:, 10.1016/j.str.2013.09.013. PMID:24183574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (3zpv.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3zpv.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (3zpv.pdb3.gz) 21 Kb
  • Biological Unit Coordinates (3zpv.pdb4.gz) 20 Kb
  • Biological Unit Coordinates (3zpv.pdb5.gz) 21 Kb
  • Biological Unit Coordinates (3zpv.pdb6.gz) 20 Kb
  • Biological Unit Coordinates (3zpv.pdb7.gz) 21 Kb
  • Biological Unit Coordinates (3zpv.pdb8.gz) 21 Kb
  • Biological Unit Coordinates (3zpv.pdb9.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3ZPV
  • CSU: Contacts of Structural Units for 3ZPV
  • Structure Factors (2554 Kb)
  • Retrieve 3ZPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZPV from S2C, [Save to disk]
  • Re-refined 3zpv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ZPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ZPV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZPV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zpv_X] [3zpv_J] [3zpv_5] [3zpv_M] [3zpv_I] [3zpv_U] [3zpv_D] [3zpv_K] [3zpv] [3zpv_Z] [3zpv_2] [3zpv_P] [3zpv_L] [3zpv_B] [3zpv_1] [3zpv_Y] [3zpv_W] [3zpv_Q] [3zpv_R] [3zpv_O] [3zpv_0] [3zpv_9] [3zpv_6] [3zpv_T] [3zpv_C] [3zpv_G] [3zpv_A] [3zpv_S] [3zpv_4] [3zpv_7] [3zpv_N] [3zpv_V] [3zpv_F] [3zpv_H] [3zpv_8] [3zpv_E] [3zpv_3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZPV: [PHD ] by SMART
    • Other resources with information on 3ZPV
  • Community annotation for 3ZPV at PDBWiki (http://pdbwiki.org)

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