3ZYQ Signaling date Aug 24, 2011
title Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepa Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Resolution
authors J.R.C.Muniz, V.Ayinampudi, L.Shrestha, T.Krojer, M.Vollmar, F.Von C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, A.Bullock
compound source
Molecule: Hepatocyte Growth Factor-Regulated Tyrosine Kinas Substrate;
Chain: A
Fragment: Vhs And Fyve Domains, Residues 691-915
Synonym: Hrs, Protein Pp110
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic28-Bsa4
symmetry Space Group: I 1 2 1
R_factor 0.164 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.256 34.346 170.533 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand EDO, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3zyq.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3ZYQ
  • CSU: Contacts of Structural Units for 3ZYQ
  • Structure Factors (1934 Kb)
  • Retrieve 3ZYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZYQ from S2C, [Save to disk]
  • Re-refined 3zyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZYQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZYQ, from MSDmotif at EBI
  • Fold representative 3zyq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zyq] [3zyq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZYQ: [FYVE] [VHS ] by SMART
  • Other resources with information on 3ZYQ
  • Community annotation for 3ZYQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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