3K9W Transferase date Oct 16, 2009
title Crystal Structure Of Phosphopantetheine Adenylyltransferase Burkholderia Pseudomallei With Hydrolyzed 3'-Dephospho Coen
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Phosphopantetheine Adenylyltransferase
Chain: A
Synonym: Pantetheine-Phosphate Adenylyltransferase, Ppat, D Coa Pyrophosphorylase;
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei
Organism_taxid: 320372
Strain: 1710b
Gene: Coad, Burps1710b_0748
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Ava0421
symmetry Space Group: I 4 3 2
R_factor 0.191 R_Free 0.207
length a length b length c angle alpha angle beta angle gamma
134.431 134.431 134.431 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 4PS, ACT, ADE, PG4, SO4 enzyme Transferase E.C. BRENDA
Gene BURPS1710B

Primary referenceStructures of phosphopantetheine adenylyltransferase from Burkholderia pseudomallei., Edwards TE, Leibly DJ, Bhandari J, Statnekov JB, Phan I, Dieterich SH, Abendroth J, Staker BL, Van Voorhis WC, Myler PJ, Stewart LJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt, 9):1032-7. Epub 2011 Aug 13. PMID:21904046
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3k9w.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 3K9W
  • CSU: Contacts of Structural Units for 3K9W
  • Structure Factors (432 Kb)
  • Retrieve 3K9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K9W from S2C, [Save to disk]
  • Re-refined 3k9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K9W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3K9W, from MSDmotif at EBI
  • Fold representative 3k9w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k9w] [3k9w_A]
  • SWISS-PROT database: [Q3JW91]
  • Domain organization of [COAD_BURP1] by SWISSPFAM
  • Other resources with information on 3K9W
  • Community annotation for 3K9W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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